I hope this is enough.
Recently updated chart for anime.
Recently updated chart for manga.
My own personal list.
* = Worthwhile sequels or prequels.
[] = from said anthology or special condition.
ANIME TV SERIES
FAVORITES
Bakemonogatari*
Welcome To The NHK
Mushishi*
Great Teacher Onizuka
Nichijou
Cowboy Bebop
Steins;gate
OTHER FAVORITES
Clannad: After Story*
Spice and wolf*
Angel Beats
Fate/Zero
Tengen Toppa Gurren Lagann
Baccano
Puella Magi Madoka Magica
Code Geass*
Katanagatari
The Tatami Galaxy
Samurai Champloo
Usagi Drop
Ano Hi Mita Hana no Namae o Bokutachi wa Mada Shiranai
Psycho Pass
Kids on the Slope
Fullmetal Alchemist Brotherhood
Non Non Biyori*
Full Metal Panic? Fumoffu
Hyouka
Nodame Cantabile
Death Note
Dennou Coil
Abenobashi Mahou Shoutengai
Serial Experiments Lain
Haibane Renmei
FLCL
Kino's Journey: The Beautiful World
Texhnolyze
Kaiji*
Sora no Woto
CONSIDER
Azumanga Daioh
Darker Than Black
Chuunibyou demo Koi ga Shitai!
Panty and Stocking with Garterbelt
Toradora
Beck
Space Dandy*
Kokoro Connect
Ergo Proxy
Honey & Clover
Kamichu!
Genshiken
Shirobako
Death Parade
Shigatsu wa Kimi no Uso
Full Metal Panic!
Yahari Ore no Seishun Love Comedy wa Machigatteiru.
Monster
Charlotte
Kekkai Sensen
One Punch Man
Kemonozume
Ghost Stories [dub]
Michiko to Hatchin
Denpa Onna to Seishun Otoko
Barakamon
Bounen no Xamdou
Neon Genesis Evangelion
Durarara!!
Sayonara Zetsubou Sensei
Kaiba
Nichibros
Gekkan Shoujo Nozaki-kun
Kure-nai
Sakurasou no Pet na Kanojo
Kono Subarashii Sekai ni Shukufuku wo!
The Melancholy of Haruhi Suzumiya
Yozakura Quartet: Hana no Uta
Carnival Phantasm
ANIME MOVIES, OVA & SHORTS
FAVORITES
The Disapperance of Haruhi Suzuimya
Rurouni Kenshin: Reminiscence
Millennium Actress
Spirited Away
OTHER FAVORITES
Wolf Children
Perfect Blue
End of Evangelion
Paprika
Tokyo Godfathers
Ponyo on the Cliff by the Sea
Sword Of The Stranger
Grave of the Fireflies
Akira
Mind Game
Redline
The Girl Who Leapt Through Time
Plastic Nee-san
Kaguya-hime no Monogatari
Tsumiki no Ie
Golden Boy
Jin-Roh: The Wolf Brigade
Ghost In The Shell
Princess Mononoke
Diebuster
Dead Leaves
Ocean Waves
Mobile Police Patlabor: The Movie 2
Magnetic Rose [Memories]
Ninja Scroll
Kokoro ga Sakebitagatterunda.
CONSIDER
Denpa Teki na Kanojo
Hotarubi no Mori e
Little Witch Academia
Tekkon Kinkreet
5 Centimeters per Second
Cencoroll
Steamboy
Eve no Jikan
Patema Inverted
The Place Promised in Our Early Days
Giovanni no Shima
A Letter To Momo
Tamako: Love Story
Colorful
Ghost In The Shell 2: Innocence
Lupin III: The Fuma Conspiracy
Lupin III: The Castle of Cagliostro
Evangelion 2.22
Yukikaze
Yokohama Kaidashi Kikou
Summer Wars
Kara no Kyoukai
Gunbuster
The Cat Returns
Mai-Mai Miracle
Mobile Police Patlabor: The Movie
Ohayo [Ani*Kuri15]
Barefoot Gen
Metropolis
Furiko
My Neighbors the Yamadas
Roujin Z
Origin: Spirits of The Past
The Wings of Honneamise
Piano no Mori
Nasu: Suitcase no Wataridori
Mobile Police Patlabor: WXIII
Only Yesterday
Cowboy Bebop: Knockin' on Heaven's Door
UNDERRATED (Ranked over 1000 on MAL)
Kemonozume
Yukikaze
Abenobashi Mahou Shoutengai
Yokohama Kaidashi Kikou
Ocean Waves
Kamichu!
Steamboy
Plastic Neesan
Mobile Police Patlabor: The Movie
Dead Leaves
Mobile Police Patlabor: WXIII
Only Yesterday
Sora No Woto
Ninja Scroll
Kure-nai
VISUAL NOVELS
Fate// Stay Night
Ever 17
Kira Kira
Planetarian
MANGA
FAVORITES
Berserk
Tomorrow's Joe
Masturbator Man
Koe no Katachi
Lone Wolf and Cub
Nichijou
Samurai Executioner
OTHER FAVORITES
Goodnight Punpun
Molester Man
Memories of Emanon
Franken Fran
Vagabond
Homunculus
20th Century Boys
Uzumaki
Otoyomegatari
Himizu
Tasogare Otome x Amnesia
Akagi
Kaiji
Ghost In The shell
Rokudenshi Blues
Bastard
Fuuko no Iru Mise
Sexy Voice and Robo
Gekkan Shoujo Nozaki-kun
Hajime no Ippo
Great Teacher Onizuka*
Boku no Hero Academia
CONSIDER
Love Roma
Instant Bullet
Cromartie High School
$100 Is Too Cheap
Solanin
Eden - It's a Endless World
Pluto
The World God Only Knows
Kimi wa Midara na Boku no Joou
Bonnouji
Mysterious Girlfriend X
Fist of the North Star
Appleseed
Ranma 1/2
Ai-Ren
Highschool of the Dead
King of Thorns
C.A.T.
Golden Boy
Buraiden Gai
Domu
Kawaii Joushi o Komasaretai
China Girl
Sukima Shiki
LIGHT NOVELS
CONSIDER
Spice and Wolf
Yahari Ore no Seishun Love Comedy wa Machigatteiru
Monogatari Series
Suzumiya Haruhi Series